Utilize este identificador para referenciar este registo: http://hdl.handle.net/10400.7/747
Título: Enhancer regions show high histone H3.3 turnover that changes during differentiation
Autor: Deaton, Aimee M
Gómez-Rodríguez, Mariluz
Mieczkowski, Jakub
Tolstorukov, Michael Y
Kundu, Sharmistha
Sadreyev, Ruslan I
Jansen, Lars ET
Kingston, Robert E
Palavras-chave: genes and chromosomes
chromatin
differentiation
histone H3.3
Mouse
stem cells
turnover
Data: 15-Jun-2016
Editora: eLife Sciences Publications
Citação: eLife 2016;5:e15316
Resumo: The organization of DNA into chromatin is dynamic; nucleosomes are frequently displaced to facilitate the ability of regulatory proteins to access specific DNA elements. To gain insight into nucleosome dynamics, and to follow how dynamics change during differentiation, we used a technique called time-ChIP to quantitatively assess histone H3.3 turnover genome-wide during differentiation of mouse ESCs. We found that, without prior assumptions, high turnover could be used to identify regions involved in gene regulation. High turnover was seen at enhancers, as observed previously, with particularly high turnover at super-enhancers. In contrast, regions associated with the repressive Polycomb-Group showed low turnover in ESCs. Turnover correlated with DNA accessibility. Upon differentiation, numerous changes in H3.3 turnover rates were observed, the majority of which occurred at enhancers. Thus, time-ChIP measurement of histone turnover shows that active enhancers are unusually dynamic in ESCs and changes in highly dynamic nucleosomes predominate at enhancers during differentiation.
Descrição: Data availability - High throughput sequencing data has been deposited in GEO and is accessible using the following links: Time-ChIP: GSE78876 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE78876 ChIP-seq: GSE78899 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE78899 MNase titration and RNA-seq: GSE78984 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE78984
Peer review: yes
URI: http://hdl.handle.net/10400.7/747
DOI: 10.7554/eLife.15316
Versão do Editor: https://elifesciences.org/content/5/e15316
Aparece nas colecções:EM - Artigos

Ficheiros deste registo:
Ficheiro Descrição TamanhoFormato 
e15316-download.pdfartigo principal4,32 MBAdobe PDFVer/Abrir
e15316-download.figures.pdfmaterial suplementar 112,55 MBAdobe PDFVer/Abrir
elife-15316-supp1-v2-download.xlsxmaterial suplementar 276,43 kBMicrosoft Excel XMLVer/Abrir
elife-15316-supp2-v2-download.xlsxmaterial suplementar 375,79 kBMicrosoft Excel XMLVer/Abrir
elife-15316-supp3-v2-download.xlsxmaterial suplementar 41,22 MBMicrosoft Excel XMLVer/Abrir
elife-15316-supp4-v2-download.xlsxmaterial suplementar 534,31 kBMicrosoft Excel XMLVer/Abrir
elife-15316-supp5-v2-download.xlsxmaterial suplementar 69,64 kBMicrosoft Excel XMLVer/Abrir
elife-15316-supp6-v2-download.xlsxmaterial suplementar 741,95 kBMicrosoft Excel XMLVer/Abrir


FacebookTwitterDeliciousLinkedInDiggGoogle BookmarksMySpace
Formato BibTex MendeleyEndnote Degois 

Todos os registos no repositório estão protegidos por leis de copyright, com todos os direitos reservados.