Path2Models: large-scale generation of computational models from biochemical pathway maps

Büchel, FinjaRodriguez, NicolasSwainston, NeilWrzodek, ClemensCzauderna, TobiasKeller, RolandMittag, FlorianSchubert, MichaelGlont, MihaiGolebiewski, Martinvan Iersel, MartijnKeating, SarahRall, MatthiasWybrow, MichaelHermjakob, HenningHucka, MichaelKell, Douglas BMüller, WolfgangMendes, PedroZell, AndreasChaouiya, ClaudineSaez-Rodriguez, JulioSchreiber, FalkLaibe, CamilleDräger, AndreasLe Novère, Nicolas2015-10-232015-10-232013-11-01Büchel et al. : Path2Models: large-scale generation of computational models from biochemical pathway maps. BMC Systems Biology 2013 7 :116http://hdl.handle.net/10400.7/436Systems biology projects and omics technologies have led to a growing number of biochemical pathway models and reconstructions. However, the majority of these models are still created de novo, based on literature mining and the manual processing of pathway data.engModular rate lawConstraint based modelsLogical modelsSBGNSBMLPath2Models: large-scale generation of computational models from biochemical pathway mapsjournal article10.1186/1752-0509-7-116