Path2Models: large-scale generation of computational models from biochemical pathway maps

http://hdl.handle.net/10400.7/436

Use this identifier to reference this record.

Name:	Description:	Size:	Format:
Büchel_BMCSystemsBiol_2013.pdf	main article	1.5 MB	Adobe PDF	Download

Authors

Rodriguez, Nicolas

Swainston, Neil

Wrzodek, Clemens

Czauderna, Tobias

Mittag, Florian

Schubert, Michael

Golebiewski, Martin

Abstract(s)

Systems biology projects and omics technologies have led to a growing number of biochemical pathway models and reconstructions. However, the majority of these models are still created de novo, based on literature mining and the manual processing of pathway data.

Keywords

Modular rate law Constraint based models Logical models SBGN SBML

URI

http://hdl.handle.net/10400.7/436

Citation

Büchel et al. : Path2Models: large-scale generation of computational models from biochemical pathway maps. BMC Systems Biology 2013 7 :116

Research Projects

Eukaryotic unicellular organism biology – systems biology of the control of cell growth and proliferation

Research ProjectShow more

From Data to Models: New Bioinformatics Methods and Tools for Data-Driven Predictive Dynamic Modelling in Biotechnological Applications

Research ProjectShow more

Automated multi-level modeling of biological systems considering physico-chemical constraints

Research ProjectShow more

Publisher

BioMed Central

DOI

10.1186/1752-0509-7-116

Collections

CC License

Altmetrics